IntaRNA
Namespace: AppliedFSharp
Parent Module: ContainerAPIs
API for a bioContainer conform docker container containing the IntaRNA() software package
Nested types and modules
| Type | Description |
| HelixOptions | |
| OutputModeOptions |
--outMode arg (=N) |
| PredictionModeOptions |
Interaction: -m [ --mode ] arg (=H) prediction mode |
| QueryAcessibilityComputationOptions | |
| QueryAcessibilityComputationTypeOptions |
--qAcc arg (=C) accessibility computation : 'N' no accessibility contributions 'C' computation of accessibilities 'P' unpaired probabilities in RNAplfold format from --qAccFile 'E' ED values in RNAplfold Pu-like format from --qAccFile |
| SeedOptions | |
| TargetAcessibilityComputationOptions | |
| TargetAcessibilityComputationTypeOptions |
| Module | Description |
| DefaultConfig |
Default settings i used in the original script |
Functions and values
| Function or value | Description |
runIntaRNA bcContext opt
Signature: bcContext:(type) -> opt:IntaRNAParams list -> string
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Runs IntaRNA with the given the input parameters in a container specified by the bcContext |
runIntaRNAAsync bcContext opt
Signature: bcContext:(type) -> opt:IntaRNAParams list -> Async<string>
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