SeedOptions
Namespace: AppliedFSharp
Parent Module: IntaRNA
Union Cases
| Union Case | Description |
BPAmount(int)
Signature: int
|
--seedBP arg (=7) number of inter-molecular base pairs within the seed region (arg in range [2,20]) |
MaxUnpairedBases(int)
Signature: int
|
--seedMaxUP arg (=0) maximal overall number (query+target) of unpaired bases within the seed region (arg in range [0,20]) |
NoSeed
Signature:
|
--noSeed if present, no seed is enforced within the predicted interactions |
SeedList(string)
Signature: string
|
--seedTQ arg comma separated list of explicit seed base pair encoding(s) in the format startTbpsT&startQbpsQ, e.g. '3|||.|&7||.||', where startT/Q are the indices of the 5' seed ends in target/query sequence and 'bps' the dot-bar base pair encodings. This disables all other seed constraints and seed identification. |
Static members
| Static member | Description |
SeedOptions.make
Signature: SeedOptions -> string list
|
CompiledName: |
