DeedleOperations
Namespace: AppliedFSharp
Functions and values
| Function or value | Description |
getHybridizationCandidatesFrame(...)
Signature: primerSequenceMap:(type) -> frameForHybridisation:(type) -> (type)
|
Returns a frame with the blast results with the lowest evalue for all primer candidates. This corresponds to the first match with no 100% identity |
getResultFrameWithHybridisationEnergies(...)
Signature: bcContext:(type) -> hybridizationCandidatesFrame:(type) -> (type)
|
returns a frame containing the selfalign, internal loop, and cross hybridization energy for the input primer candidates using IntaRNA for prediction. |
readCleanedBlastResultFrame(path)
Signature: path:string -> (type)
|
reads a cleaned (no comment lines) blast result and filters identical matches |
sortFrameForHybridization(...)
Signature: cleanBlastResultFrame:(type) -> (type)
|
removes unnecessary columns from the blast result frame and groups primers by query id, generation index, direction (fwd/rev) and row index |
